bioperl variation-related functionality
Project homepage: https://metacpan.org/release/Bio-Variation
Description
Bio::Variation name space contains modules to store sequence variation
information as differences between the reference sequence and changes
sequences. Also included are classes to write out and recreate objects from
EMBL-like flat files and XML. Lastly, there are simple classes to calculate
values for sequence change objects.
Package information
- Ports path
- biology/p5-Bio-Variation
- Package architecture
- *
- Maintainer
- The OpenBSD ports mailing-list <ports@openbsd.org>
- Categories
- biology, perl5
- Available flavors
- None listed
Ports list build and test dependencies as well as runtime dependencies. pkg_add selects those needed for installation.
Direct dependencies
Runtime
- biology/p5-Bio-DB-EMBL
- biology/p5-Bio-DB-NCBIHelper
- biology/bioperl STEM->=1.7.7
- devel/p5-IO-String
- textproc/p5-XML-Twig
- textproc/p5-XML-Writer STEM->=0.4
Test
- biology/p5-Bio-DB-EMBL
- biology/p5-Bio-DB-NCBIHelper
- biology/bioperl STEM->=1.7.7
- devel/p5-IO-String
- textproc/p5-XML-Twig
- textproc/p5-XML-Writer STEM->=0.4
Used by (1 dependency relationships)
Includes library, runtime, build and test dependencies.